Detailed information of SNP:
|
SNP ID:
sf0713274070(Gbrowse)
Chromosome: chr07 Position: 13274070 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 96.16% | 3.84% |
| All Indica | 790 | 95.82% | 4.18% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 63 | 84.13% | 15.87% |
| Indica I | 372 | 95.97% | 4.03% |
| Indica II | 208 | 96.63% | 3.37% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713274070 | C->T | LOC_Os07g23485(LOC_Os07g23485.1) | UTR_3_PRIME |