Detailed information of SNP:
|
SNP ID:
sf0713274143(Gbrowse)
Chromosome: chr07 Position: 13274143 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 95.13% | 4.87% |
| All Indica | 787 | 96.70% | 3.30% |
| All Japonica | 495 | 97.58% | 2.42% |
| Aus | 60 | 61.67% | 38.33% |
| Indica I | 372 | 97.31% | 2.69% |
| Indica II | 208 | 95.67% | 4.33% |
| Indica Intermediate | 207 | 96.62% | 3.38% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713274143 | G->A | LOC_Os07g23485(LOC_Os07g23485.1) | UTR_3_PRIME |