Detailed information of SNP:
|
SNP ID:
sf0713292455(Gbrowse)
Chromosome: chr07 Position: 13292455 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1305 | 93.87% | 6.13% |
| All Indica | 798 | 95.24% | 4.76% |
| All Japonica | 387 | 89.41% | 10.59% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 249 | 85.14% | 14.86% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 45 | 93.33% | 6.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713292455 | T->C | INTERGENIC | None |