Detailed information of SNP:
|
SNP ID:
sf0713305663(Gbrowse)
Chromosome: chr07 Position: 13305663 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 74.72% | 25.28% |
| All Indica | 796 | 94.47% | 5.53% |
| All Japonica | 497 | 40.85% | 59.15% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 95.43% | 4.57% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 45.67% | 54.33% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713305663 | C->T | INTERGENIC | None |