Detailed information of SNP:
|
SNP ID:
sf0713348054(Gbrowse)
Chromosome: chr07 Position: 13348054 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 93.86% | 6.14% |
| All Indica | 783 | 89.78% | 10.22% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 371 | 92.18% | 7.82% |
| Indica II | 209 | 86.60% | 13.40% |
| Indica Intermediate | 203 | 88.67% | 11.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713348054 | G->T | INTERGENIC | None |