Detailed information of SNP:
|
SNP ID:
sf0713356794(Gbrowse)
Chromosome: chr07 Position: 13356794 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 61.41% | 38.59% |
| All Indica | 798 | 72.06% | 27.94% |
| All Japonica | 497 | 42.05% | 57.95% |
| Aus | 58 | 72.41% | 27.59% |
| Indica I | 375 | 66.13% | 33.87% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 211 | 64.45% | 35.55% |
| Temperate Japonica | 335 | 46.27% | 53.73% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713356794 | C->A | INTERGENIC | None |