Detailed information of SNP:



SNP ID: sf0713416603(Gbrowse)

Chromosome: chr07

Position: 13416603
Major allele: A

Minor allele: T

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1407 93.25% 6.75%
All Indica790 90.63% 9.37%
All Japonica496 98.99% 1.01%
Aus66 86.36% 13.64%
Indica I371 87.33% 12.67%
Indica II212 95.28% 4.72%
Indica Intermediate207 91.79% 8.21%
Temperate Japonica334 99.10% 0.90%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic13 76.92% 23.08%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0713416603 A->T INTERGENIC None