Detailed information of SNP:
|
SNP ID:
sf0713464190(Gbrowse)
Chromosome: chr07 Position: 13464190 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 95.01% | 4.99% |
| All Indica | 766 | 91.38% | 8.62% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 352 | 86.93% | 13.07% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 203 | 92.61% | 7.39% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713464190 | C->T | LOC_Os07g23840(LOC_Os07g23840.1) | Non-Synonymous SNP |