Detailed information of SNP:
|
SNP ID:
sf0713521834(Gbrowse)
Chromosome: chr07 Position: 13521834 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 51.45% | 48.55% |
| All Indica | 799 | 29.04% | 70.96% |
| All Japonica | 496 | 87.30% | 12.70% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 34.40% | 65.60% |
| Indica II | 213 | 10.33% | 89.67% |
| Indica Intermediate | 211 | 38.39% | 61.61% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713521834 | C->T | LOC_Os07g23920(LOC_Os07g23920.1) | INTRON |