Detailed information of SNP:
|
SNP ID:
sf0713522002(Gbrowse)
Chromosome: chr07 Position: 13522002 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 91.16% | 8.84% |
| All Indica | 794 | 98.11% | 1.89% |
| All Japonica | 493 | 79.31% | 20.69% |
| Aus | 62 | 96.77% | 3.23% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 210 | 98.10% | 1.90% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 333 | 77.18% | 22.82% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713522002 | A->G | LOC_Os07g23920(LOC_Os07g23920.1) | Non-Synonymous SNP |