Detailed information of SNP:
|
SNP ID:
sf0713572121(Gbrowse)
Chromosome: chr07 Position: 13572121 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 80.35% | 19.65% |
| All Indica | 796 | 71.23% | 28.77% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 67.73% | 32.27% |
| Indica II | 212 | 82.08% | 17.92% |
| Indica Intermediate | 209 | 66.51% | 33.49% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713572121 | C->T | INTERGENIC | None |