Detailed information of SNP:



SNP ID: sf0713614041(Gbrowse)

Chromosome: chr07

Position: 13614041
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1341 96.87% 3.13%
All Indica724 94.20% 5.80%
All Japonica496 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I344 90.41% 9.59%
Indica II185 98.38% 1.62%
Indica Intermediate195 96.92% 3.08%
Temperate Japonica334 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0713614041 G->A LOC_Os07g24020(LOC_Os07g24020.1) Non-Synonymous SNP