Detailed information of SNP:
|
SNP ID:
sf0713614041(Gbrowse)
Chromosome: chr07 Position: 13614041 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1341 | 96.87% | 3.13% |
| All Indica | 724 | 94.20% | 5.80% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 344 | 90.41% | 9.59% |
| Indica II | 185 | 98.38% | 1.62% |
| Indica Intermediate | 195 | 96.92% | 3.08% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713614041 | G->A | LOC_Os07g24020(LOC_Os07g24020.1) | Non-Synonymous SNP |