Detailed information of SNP:
|
SNP ID:
sf0713626346(Gbrowse)
Chromosome: chr07 Position: 13626346 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 59.49% | 40.51% |
| All Indica | 799 | 93.24% | 6.76% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713626346 | G->A | INTERGENIC | None |