Detailed information of SNP:
|
SNP ID:
sf0713635565(Gbrowse)
Chromosome: chr07 Position: 13635565 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 57.29% | 42.71% |
| All Indica | 799 | 89.86% | 10.14% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713635565 | C->T | INTERGENIC | None |