Detailed information of SNP:
|
SNP ID:
sf0713644880(Gbrowse)
Chromosome: chr07 Position: 13644880 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1286 | 95.49% | 4.51% |
| All Indica | 790 | 98.48% | 1.52% |
| All Japonica | 373 | 88.74% | 11.26% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 202 | 95.05% | 4.95% |
| Temperate Japonica | 237 | 85.23% | 14.77% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 45 | 86.67% | 13.33% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713644880 | C->T | LOC_Os07g24060(LOC_Os07g24060.1) | INTRON |