Detailed information of SNP:
|
SNP ID:
sf0713646340(Gbrowse)
Chromosome: chr07 Position: 13646340 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1290 | 92.95% | 7.05% |
| All Indica | 677 | 87.15% | 12.85% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 336 | 91.67% | 8.33% |
| Indica II | 150 | 70.67% | 29.33% |
| Indica Intermediate | 191 | 92.15% | 7.85% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713646340 | C->T | INTERGENIC | None |