Detailed information of SNP:
|
SNP ID:
sf0713646704(Gbrowse)
Chromosome: chr07 Position: 13646704 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 94.76% | 5.24% |
| All Indica | 769 | 94.15% | 5.85% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 52 | 57.69% | 42.31% |
| Indica I | 356 | 93.82% | 6.18% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 202 | 92.57% | 7.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713646704 | C->T | LOC_Os07g24070(LOC_Os07g24070.1) | INTRON |