Detailed information of SNP:
|
SNP ID:
sf0713682077(Gbrowse)
Chromosome: chr07 Position: 13682077 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 90.09% | 9.91% |
| All Indica | 796 | 97.74% | 2.26% |
| All Japonica | 484 | 75.62% | 24.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 85.97% | 14.03% |
| Tropical Japonica | 83 | 28.92% | 71.08% |
| Japonica Intermediate | 66 | 81.82% | 18.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713682077 | A->G | INTERGENIC | None |