Detailed information of SNP:
|
SNP ID:
sf0713682291(Gbrowse)
Chromosome: chr07 Position: 13682291 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1244 | 95.26% | 4.74% |
| All Indica | 643 | 91.91% | 8.09% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 55 | 100.00% | 0.00% |
| Indica I | 290 | 91.72% | 8.28% |
| Indica II | 170 | 87.65% | 12.35% |
| Indica Intermediate | 183 | 96.17% | 3.83% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 35 | 94.29% | 5.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713682291 | T->C | INTERGENIC | None |