Detailed information of SNP:
|
SNP ID:
sf0713712701(Gbrowse)
Chromosome: chr07 Position: 13712701 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 74.82% | 25.18% |
| All Indica | 799 | 93.37% | 6.63% |
| All Japonica | 484 | 38.84% | 61.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 325 | 27.69% | 72.31% |
| Tropical Japonica | 91 | 84.62% | 15.38% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713712701 | A->G | INTERGENIC | None |