Detailed information of SNP:
|
SNP ID:
sf0713718169(Gbrowse)
Chromosome: chr07 Position: 13718169 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 58.07% | 41.93% |
| All Indica | 798 | 91.23% | 8.77% |
| All Japonica | 494 | 1.42% | 98.58% |
| Aus | 62 | 82.26% | 17.74% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 74.29% | 25.71% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 66 | 6.06% | 93.94% |
| Group VI/Aromatic | 4 | 25.00% | 75.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713718169 | C->T | INTERGENIC | None |