Detailed information of SNP:
|
SNP ID:
sf0713783423(Gbrowse)
Chromosome: chr07 Position: 13783423 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 94.52% | 5.48% |
| All Indica | 786 | 90.46% | 9.54% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 363 | 86.23% | 13.77% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713783423 | T->A | LOC_Os07g24240(LOC_Os07g24240.1) | Non-Synonymous SNP |