Detailed information of SNP:
|
SNP ID:
sf0713785261(Gbrowse)
Chromosome: chr07 Position: 13785261 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1254 | 92.90% | 7.10% |
| All Indica | 676 | 87.72% | 12.28% |
| All Japonica | 457 | 99.12% | 0.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 330 | 87.88% | 12.12% |
| Indica II | 163 | 80.98% | 19.02% |
| Indica Intermediate | 183 | 93.44% | 6.56% |
| Temperate Japonica | 300 | 99.00% | 1.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 98.41% | 1.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713785261 | C->T | INTERGENIC | None |