Detailed information of SNP:
|
SNP ID:
sf0713836314(Gbrowse)
Chromosome: chr07 Position: 13836314 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 84.45% | 15.55% |
| All Indica | 792 | 78.16% | 21.84% |
| All Japonica | 487 | 92.81% | 7.19% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 71.20% | 28.80% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 204 | 72.55% | 27.45% |
| Temperate Japonica | 325 | 90.46% | 9.54% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713836314 | T->C | INTERGENIC | None |