Detailed information of SNP:
|
SNP ID:
sf0713862441(Gbrowse)
Chromosome: chr07 Position: 13862441 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1304 | 60.05% | 39.95% |
| All Indica | 740 | 38.38% | 61.62% |
| All Japonica | 446 | 89.69% | 10.31% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 345 | 44.93% | 55.07% |
| Indica II | 210 | 17.62% | 82.38% |
| Indica Intermediate | 185 | 49.73% | 50.27% |
| Temperate Japonica | 294 | 87.76% | 12.24% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 83.05% | 16.95% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713862441 | A->G | LOC_Os07g24360(LOC_Os07g24360.1) | Non-Synonymous SNP |