Detailed information of SNP:
|
SNP ID:
sf0713863618(Gbrowse)
Chromosome: chr07 Position: 13863618 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1385 | 93.50% | 6.50% |
| All Indica | 798 | 96.62% | 3.38% |
| All Japonica | 464 | 87.28% | 12.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 308 | 87.66% | 12.34% |
| Tropical Japonica | 90 | 92.22% | 7.78% |
| Japonica Intermediate | 66 | 78.79% | 21.21% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713863618 | C->T | INTERGENIC | None |