Detailed information of SNP:
|
SNP ID:
sf0713885941(Gbrowse)
Chromosome: chr07 Position: 13885941 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 87.37% | 12.63% |
| All Indica | 779 | 88.70% | 11.30% |
| All Japonica | 486 | 82.72% | 17.28% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 365 | 86.85% | 13.15% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 203 | 83.25% | 16.75% |
| Temperate Japonica | 327 | 77.68% | 22.32% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 65 | 84.62% | 15.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713885941 | A->T | LOC_Os07g24390(LOC_Os07g24390.1) | Non-Synonymous SNP |