Detailed information of SNP:
|
SNP ID:
sf0713886353(Gbrowse)
Chromosome: chr07 Position: 13886353 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 90.73% | 9.27% |
| All Indica | 790 | 92.91% | 7.09% |
| All Japonica | 491 | 86.35% | 13.65% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 368 | 90.49% | 9.51% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 330 | 80.61% | 19.39% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713886353 | C->T | LOC_Os07g24390(LOC_Os07g24390.1) | SNPs that introduce stop codons |