Detailed information of SNP:
|
SNP ID:
sf0713890684(Gbrowse)
Chromosome: chr07 Position: 13890684 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1349 | 76.80% | 23.20% |
| All Indica | 773 | 85.25% | 14.75% |
| All Japonica | 463 | 58.96% | 41.04% |
| Aus | 61 | 95.08% | 4.92% |
| Indica I | 358 | 85.75% | 14.25% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 204 | 77.94% | 22.06% |
| Temperate Japonica | 309 | 49.51% | 50.49% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 61 | 67.21% | 32.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713890684 | T->C | INTERGENIC | None |