Detailed information of SNP:
|
SNP ID:
sf0713894678(Gbrowse)
Chromosome: chr07 Position: 13894678 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 97.00% | 3.00% |
| All Indica | 780 | 95.00% | 5.00% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 93.66% | 6.34% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 204 | 92.16% | 7.84% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713894678 | A->G | LOC_Os07g24400(LOC_Os07g24400.1) | Synonymous |