Detailed information of SNP:
|
SNP ID:
sf0713899807(Gbrowse)
Chromosome: chr07 Position: 13899807 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 75.00% | 25.00% |
| All Indica | 793 | 97.98% | 2.02% |
| All Japonica | 488 | 33.20% | 66.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 97.04% | 2.96% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 208 | 99.04% | 0.96% |
| Temperate Japonica | 328 | 35.67% | 64.33% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 66 | 57.58% | 42.42% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713899807 | G->A | INTERGENIC | None |