Detailed information of SNP:
|
SNP ID:
sf0713946412(Gbrowse)
Chromosome: chr07 Position: 13946412 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 77.21% | 22.79% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 492 | 39.02% | 60.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 40.12% | 59.88% |
| Tropical Japonica | 92 | 18.48% | 81.52% |
| Japonica Intermediate | 66 | 62.12% | 37.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713946412 | T->C | INTERGENIC | None |