Detailed information of SNP:
|
SNP ID:
sf0714024869(Gbrowse)
Chromosome: chr07 Position: 14024869 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1380 | 68.70% | 31.30% |
| All Indica | 796 | 90.58% | 9.42% |
| All Japonica | 465 | 28.17% | 71.83% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 307 | 31.60% | 68.40% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 64 | 45.31% | 54.69% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714024869 | C->A | INTERGENIC | None |