Detailed information of SNP:
|
SNP ID:
sf0714028017(Gbrowse)
Chromosome: chr07 Position: 14028017 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 95.91% | 4.09% |
| All Indica | 777 | 94.34% | 5.66% |
| All Japonica | 494 | 97.77% | 2.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 97.56% | 2.44% |
| Indica II | 206 | 90.78% | 9.22% |
| Indica Intermediate | 202 | 92.08% | 7.92% |
| Temperate Japonica | 333 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714028017 | A->G | LOC_Os07g24660(LOC_Os07g24660.1) | Synonymous |