Detailed information of SNP:
|
SNP ID:
sf0714043546(Gbrowse)
Chromosome: chr07 Position: 14043546 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1287 | 71.87% | 28.13% |
| All Indica | 678 | 54.42% | 45.58% |
| All Japonica | 494 | 99.19% | 0.81% |
| Aus | 62 | 43.55% | 56.45% |
| Indica I | 320 | 68.12% | 31.87% |
| Indica II | 188 | 38.83% | 61.17% |
| Indica Intermediate | 170 | 45.88% | 54.12% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714043546 | C->T | LOC_Os07g24690(LOC_Os07g24690.1) | Synonymous |