Detailed information of SNP:
|
SNP ID:
sf0714047677(Gbrowse)
Chromosome: chr07 Position: 14047677 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1141 | 73.18% | 26.82% |
| All Indica | 584 | 57.53% | 42.47% |
| All Japonica | 453 | 92.94% | 7.06% |
| Aus | 57 | 73.68% | 26.32% |
| Indica I | 270 | 61.11% | 38.89% |
| Indica II | 153 | 47.71% | 52.29% |
| Indica Intermediate | 161 | 60.87% | 39.13% |
| Temperate Japonica | 296 | 92.23% | 7.77% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 63 | 93.65% | 6.35% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 34 | 67.65% | 32.35% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714047677 | T->C | INTERGENIC | None |