Detailed information of SNP:
|
SNP ID:
sf0714074709(Gbrowse)
Chromosome: chr07 Position: 14074709 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1352 | 58.65% | 41.35% |
| All Indica | 751 | 37.95% | 62.05% |
| All Japonica | 484 | 91.94% | 8.06% |
| Aus | 65 | 36.92% | 63.08% |
| Indica I | 344 | 44.77% | 55.23% |
| Indica II | 205 | 32.20% | 67.80% |
| Indica Intermediate | 202 | 32.18% | 67.82% |
| Temperate Japonica | 325 | 91.38% | 8.62% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 65 | 87.69% | 12.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714074709 | G->A | LOC_Os07g24760(LOC_Os07g24760.1) | Synonymous |