Detailed information of SNP:
|
SNP ID:
sf0714084412(Gbrowse)
Chromosome: chr07 Position: 14084412 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 53.58% | 46.42% |
| All Indica | 769 | 26.01% | 73.99% |
| All Japonica | 491 | 95.72% | 4.28% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 360 | 29.72% | 70.28% |
| Indica II | 207 | 23.19% | 76.81% |
| Indica Intermediate | 202 | 22.28% | 77.72% |
| Temperate Japonica | 331 | 95.17% | 4.83% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714084412 | C->A | LOC_Os07g24770(LOC_Os07g24770.1) | INTRON |