Detailed information of SNP:
|
SNP ID:
sf0714100044(Gbrowse)
Chromosome: chr07 Position: 14100044 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1355 | 86.42% | 13.58% |
| All Indica | 744 | 77.28% | 22.72% |
| All Japonica | 494 | 98.79% | 1.21% |
| Aus | 62 | 91.94% | 8.06% |
| Indica I | 349 | 79.66% | 20.34% |
| Indica II | 198 | 69.19% | 30.81% |
| Indica Intermediate | 197 | 81.22% | 18.78% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714100044 | G->C | LOC_Os07g24810(LOC_Os07g24810.1) | Non-Synonymous SNP |