Detailed information of SNP:
|
SNP ID:
sf0714101420(Gbrowse)
Chromosome: chr07 Position: 14101420 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1305 | 53.03% | 46.97% |
| All Indica | 718 | 29.25% | 70.75% |
| All Japonica | 473 | 91.54% | 8.46% |
| Aus | 61 | 27.87% | 72.13% |
| Indica I | 328 | 32.62% | 67.38% |
| Indica II | 199 | 17.09% | 82.91% |
| Indica Intermediate | 191 | 36.13% | 63.87% |
| Temperate Japonica | 315 | 93.97% | 6.03% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 64 | 71.88% | 28.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714101420 | G->A | LOC_Os07g24810(LOC_Os07g24810.1) | INTRON |