Detailed information of SNP:
|
SNP ID:
sf0714101862(Gbrowse)
Chromosome: chr07 Position: 14101862 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1247 | 81.48% | 18.52% |
| All Indica | 657 | 68.65% | 31.35% |
| All Japonica | 485 | 98.35% | 1.65% |
| Aus | 57 | 84.21% | 15.79% |
| Indica I | 316 | 74.68% | 25.32% |
| Indica II | 168 | 58.93% | 41.07% |
| Indica Intermediate | 173 | 67.05% | 32.95% |
| Temperate Japonica | 331 | 99.09% | 0.91% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 91.80% | 8.20% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 34 | 76.47% | 23.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714101862 | C->T | LOC_Os07g24810(LOC_Os07g24810.1) | Non-Synonymous SNP |