Detailed information of SNP:
|
SNP ID:
sf0714135544(Gbrowse)
Chromosome: chr07 Position: 14135544 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 77.46% | 22.54% |
| All Indica | 785 | 92.74% | 7.26% |
| All Japonica | 485 | 49.48% | 50.52% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 93.78% | 6.22% |
| Indica II | 207 | 91.30% | 8.70% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 325 | 40.31% | 59.69% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 66 | 56.06% | 43.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714135544 | C->T | LOC_Os07g24860(LOC_Os07g24860.1) | INTRON |