Detailed information of SNP:
|
SNP ID:
sf0714141388(Gbrowse)
Chromosome: chr07 Position: 14141388 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1353 | 91.50% | 8.50% |
| All Indica | 761 | 90.41% | 9.59% |
| All Japonica | 475 | 92.21% | 7.79% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 355 | 89.01% | 10.99% |
| Indica II | 201 | 89.55% | 10.45% |
| Indica Intermediate | 205 | 93.66% | 6.34% |
| Temperate Japonica | 331 | 96.68% | 3.32% |
| Tropical Japonica | 79 | 78.48% | 21.52% |
| Japonica Intermediate | 65 | 86.15% | 13.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714141388 | C->T | INTERGENIC | None |