Detailed information of SNP:
|
SNP ID:
sf0714147448(Gbrowse)
Chromosome: chr07 Position: 14147448 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1226 | 60.28% | 39.72% |
| All Indica | 656 | 48.02% | 51.98% |
| All Japonica | 467 | 80.30% | 19.70% |
| Aus | 52 | 42.31% | 57.69% |
| Indica I | 305 | 54.10% | 45.90% |
| Indica II | 175 | 38.86% | 61.14% |
| Indica Intermediate | 176 | 46.59% | 53.41% |
| Temperate Japonica | 315 | 78.41% | 21.59% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 59 | 64.41% | 35.59% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714147448 | A->G | LOC_Os07g24880(LOC_Os07g24880.1) | Synonymous |