Detailed information of SNP:
|
SNP ID:
sf0714164063(Gbrowse)
Chromosome: chr07 Position: 14164063 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 76.70% | 23.30% |
| All Indica | 795 | 93.33% | 6.67% |
| All Japonica | 490 | 46.53% | 53.47% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 209 | 94.26% | 5.74% |
| Temperate Japonica | 330 | 42.73% | 57.27% |
| Tropical Japonica | 92 | 48.91% | 51.09% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714164063 | A->G | LOC_Os07g24910(LOC_Os07g24910.1) | Synonymous |