Detailed information of SNP:
|
SNP ID:
sf0714164073(Gbrowse)
Chromosome: chr07 Position: 14164073 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1227 | 51.59% | 48.41% |
| All Indica | 676 | 32.40% | 67.60% |
| All Japonica | 445 | 84.27% | 15.73% |
| Aus | 59 | 28.81% | 71.19% |
| Indica I | 306 | 34.97% | 65.03% |
| Indica II | 196 | 26.53% | 73.47% |
| Indica Intermediate | 174 | 34.48% | 65.52% |
| Temperate Japonica | 297 | 86.20% | 13.80% |
| Tropical Japonica | 86 | 81.40% | 18.60% |
| Japonica Intermediate | 62 | 79.03% | 20.97% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 33 | 54.55% | 45.45% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714164073 | A->G | LOC_Os07g24910(LOC_Os07g24910.1) | Non-Synonymous SNP |