Detailed information of SNP:
|
SNP ID:
sf0714180884(Gbrowse)
Chromosome: chr07 Position: 14180884 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 78.70% | 21.30% |
| All Indica | 792 | 96.97% | 3.03% |
| All Japonica | 485 | 45.15% | 54.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 97.30% | 2.70% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 208 | 94.23% | 5.77% |
| Temperate Japonica | 329 | 48.94% | 51.06% |
| Tropical Japonica | 89 | 15.73% | 84.27% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714180884 | T->A | INTERGENIC | None |