Detailed information of SNP:
|
SNP ID:
sf0714199733(Gbrowse)
Chromosome: chr07 Position: 14199733 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 97.94% | 2.06% |
| All Indica | 798 | 97.37% | 2.63% |
| All Japonica | 487 | 98.97% | 1.03% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 87 | 94.25% | 5.75% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714199733 | G->A | LOC_Os07g24960(LOC_Os07g24960.1) | Non-Synonymous SNP |