Detailed information of SNP:
|
SNP ID:
sf0714217419(Gbrowse)
Chromosome: chr07 Position: 14217419 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 93.27% | 6.73% |
| All Indica | 795 | 89.06% | 10.94% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 211 | 72.04% | 27.96% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714217419 | G->A | LOC_Os07g24970(LOC_Os07g24970.1) | Synonymous |