Detailed information of SNP:
|
SNP ID:
sf0714223739(Gbrowse)
Chromosome: chr07 Position: 14223739 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 96.09% | 3.91% |
| All Indica | 791 | 93.93% | 6.07% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 369 | 91.06% | 8.94% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0714223739 | C->T | INTERGENIC | None |